The NMDC aims to enable the microbiome research community to decode the molecular underpinnings of fundamental biological processes, and ultimately, drive transformational discoveries. Chris Mungall is one of the Aim 1 leads, overseeing the application of existing ontology mapping tools and curation resources to automate annotation of metadata to comply with FAIR principles.

Publications:

  • Wood-Charlson EM, Anubhav, Auberry D, Blanco H, Borkum MI, Corilo YE, Davenport KW, Deshpande S, Devarakonda R, Drake M, Duncan WD, Flynn MC, Hays D, Hu B, Huntemann M, Li P-E, Lipton M, Lo C-C, Millard D, Miller K, Piehowski PD, Purvine S, Reddy TBK, Shakya M, Sundaramurthi JC, Vangay P, Wei Y, Wilson BE, Canon S, Chain PSG, Fagnan K, Martin S, McCue LA, Mungall CJ, Mouncey NJ, Maxon ME, Eloe-Fadrosh EA (2020). The National Microbiome Data Collaborative: enabling microbiome science. Nat Rev Microbiol. 2020 Apr 29; http://dx.doi.org/10.1038/s41579-020-0377-0, PMID: 32350400
  • Eloe-Fadrosh EA, Ahmed F, Anubhav A, Babinski M, Baumes J, Borkum M, Bramer L, Canon S, Christianson DS, Corilo YE, Davenport KW, Davis B, Drake M, Duncan WD, Flynn MC, Hays D, Hu B, Huntemann M, Kelliher J, Lebedeva S, Li P-E, Lipton M, Lo C-C, Martin S, Millard D, Miller K, Miller MA, Piehowski P, Jackson EP, Purvine S, Reddy TBK, Richardson R, Rudolph M, Sarrafan S, Shakya M, Smith M, Stratton K, Sundaramurthi JC, Vangay P, Winston D, Wood-Charlson EM, Xu Y, Chain PSG, McCue LA, Mans D, Mungall CJ, Mouncey NJ, Fagnan K. The National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resource. Nucleic Acids Res. Oxford University Press; 2021 Oct 30; https://academic.oup.com/nar/advance-article-abstract/doi/10.1093/nar/gkab990/6414581
  • Vangay P, Burgin J, Johnston A, Beck KL, Berrios DC, Blumberg K, Canon S, Chain P, Chandonia J-M, Christianson D, Costes SV, Damerow J, Duncan WD, Dundore-Arias JP, Fagnan K, Galazka JM, Gibbons SM, Hays D, Hervey J, Hu B, Hurwitz BL, Jaiswal P, Joachimiak MP, Kinkel L, Ladau J, Martin SL, McCue LA, Miller K, Mouncey N, Mungall C, Pafilis E, Reddy TBK, Richardson L, Roux S, Shaffer JP, Sundaramurthi JC, Thompson LR, Timme RE, Zheng J, Wood-Charlson EM, Eloe-Fadrosh EA. Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities. mSystems. American Society for Microbiology Journals; 2021 Feb 23;6(1). https://msystems.asm.org/content/6/1/e01194-20
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