NOTE: OwlSim has been replaced by Semsimian.

OwlSim is a tool for ontology-based profile matching, used by the Monarch Initiative and other projects.

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Computing on Phenotypes AMP 2015 from Chris Mungall

References

Robinson, P., Köhler, S., Oellrich, A., Wang, K., Mungall, C., Lewis, S. E., … Smedley, D. (2013). Improved exome prioritization of disease genes through cross species phenotype comparison. Genome Research. http://doi.org/10.1101/gr.160325.113

Smedley, D., Oellrich, A., Köhler, S., Ruef, B., Westerfield, M., Robinson, P., … Mungall, C. (2013). PhenoDigm: analyzing curated annotations to associate animal models with human diseases. Database : The Journal of Biological Databases and Curation, 2013, bat025. http://doi.org/10.1093/database/bat025

Chen, C.-K., Mungall, C. J., Gkoutos, G. V, Doelken, S. C., Köhler, S., Ruef, B. J., … Smedley, D. (2012). MouseFinder: Candidate disease genes from mouse phenotype data. Human Mutation, 33(5), 858–66. http://doi.org/10.1002/humu.22051

Manda, P., Mungall, C., Balhoff, J., Lapp, H., & Vision, T. (2015). Investigating the importance of anatomical homology for cross-species phenotype comparisons using semantic similarity. bioRxiv. Cold Spring Harbor Labs Journals. Retrieved from http://www.biorxiv.org/content/early/2015/10/05/028449.abstract

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